Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs61922025 chr12:12486263 G/A 0 296 22.83 20.67 0.47 KM Plot
CESC rs61922026 chr12:12486428 C/G 0 297 22.88 20.67 0.47 KM Plot
CESC rs61922027 chr12:12486444 C/T 0 296 22.83 20.67 0.47 KM Plot
CESC rs61922028 chr12:12487096 A/C 0 299 22.83 20.63 0.47 KM Plot
CESC rs61922044 chr12:12490914 G/A 0 291 23.12 17.92 0.47 KM Plot
CESC rs62005863 chr15:67153086 C/T 8.24E-5 297 21.2 22.83 8.4 KM Plot
CESC rs62005864 chr15:67153226 A/G 8.24E-5 297 21.2 22.83 8.4 KM Plot
CESC rs62131088 chr19:11393046 T/A 1.02E-5 293 21.2 24.9 12.52 KM Plot
CESC rs62576453 chr9:115629921 C/T 3.56E-5 296 4.22 21.18 23.12 KM Plot
CESC rs6537593 chr10:135056258 C/T 1.75E-14 296 21.73 18.23 3.33 KM Plot
CESC rs6537595 chr10:135056464 A/T 1.44E-14 299 21.73 19.4 3.33 KM Plot
CESC rs6557976 chr8:26915567 G/A 6.84E-5 293 15.7 21.2 26.43 KM Plot
CESC rs6559063 chr8:623051 C/T 9.11E-5 292 4.2 24.17 21.23 KM Plot
CESC rs6586008 chr10:88183161 A/T 1.35E-14 297 3.33 24.9 21.13 KM Plot
CESC rs6586009 chr10:88198096 T/C 1.18E-14 298 3.33 24.9 21.17 KM Plot